Installing subread on Ubuntu 17.04 LTS
Example of installing subread on Ubuntu 17.04 LTS using the command sudo apt-get install subread.
Quick installation of subread:
Step 1: Update system:
sudo apt-get update
Step 2: Install: subread
Ater updaing the OS run following command to install the packae:
sudo apt-get install subread
Package Details | |
| Package: | subread |
| Version: | 1.5.1+dfsg-4 |
| Maintainer: | Ubuntu Developers |
| Home page: | http://sourceforge.net/projects/subread/ |
| Description: | toolkit for processing next-gen sequencing data Subread aligner can be used to align both gDNA-seq and RNA-seq reads. Subjunc aligner was specified designed for the detection of exon-exon junction. For the mapping of RNA-seq reads, Subread performs local alignments and Subjunc performs global alignments. |
| Distro: | Ubuntu 17.04 |
| Release: | |
| Repo/Section: | universe/science |
How to install subread on Ubuntu 17.04?
First of all update your system with the command:
sudo apt-get update
Above command will download the package lists for Ubuntu 17.04 on your system. This will update the list of newest versions of packages and its dependencies on your system.
After downloading the latest package list with the help of above you can run the installation process.
If subread is not installed on your compter then the command 'dpkg -L subread' will give followin error.
deepak@deepak-VirtualBox:~$ dpkg -L subread dpkg-query: package 'subread' is not installed Use dpkg --info (= dpkg-deb --info) to examine archive files, and dpkg --contents (= dpkg-deb --contents) to list their contents. deepak@deepak-VirtualBox:~$
Installing subread:
After system update use the following command to install subread:
sudo apt-get install subread
Above command will confirm before installing the package on your Ubuntu 17.04 Operating System. If you are not already logged in as su, installer will ask you the root password. After completion of the installation you can use the package on your system.
How to uninstall/remove subread from Ubuntu 17.04?
Now we will see the commands for uninstalling the subread from Ubuntu 17.04. For uninstalling this package you can easily use the apt command and remove the package from Linux Operating System.
To remove the subread following command is used:
sudo apt-get remove subread
Following command is used to remove the subread package along with its dependencies:
sudo apt-get remove --auto-remove subread
This will remove subread and all its dependent packages which is no longer needed in the system.
Completely removing subread with all configuration files:
Following command should be used with care as it deletes all the configuration files and data:
sudo apt-get purge subread
or you can use following command also:
sudo apt-get purge --auto-remove subread
Above command will remove all the configuration files and data associated with subread package. You can can't recover the delete data, so, use this command with care.