How to install pbhoney on Ubuntu 16.10 (Yakkety Yak)?
In this article we are going to learn the commands and steps to install pbhoney package on Ubuntu 16.10.
Quick installation of pbhoney:
Step 1: Update system:
sudo apt-get update
Step 2: Install: pbhoney
Ater updaing the OS run following command to install the packae:
sudo apt-get install pbhoney
Package Details | |
| Package: | pbhoney |
| Version: | 15.8.24+dfsg-1 |
| Maintainer: | Ubuntu Developers |
| Home page: | http://sourceforge.net/projects/pb-jelly |
| Description: | genomic structural variation discovery PBHoney is an implementation of two variant-identification approaches designed to exploit the high mappability of long reads (i.e., greater than 10,000 bp). PBHoney considers both intra-read discordance and soft-clipped tails of long reads to identify structural variants. . PBHoney is part of the PBSuite. |
| Distro: | Ubuntu 16.10 |
| Release: | |
| Repo/Section: | universe/science |
How to install pbhoney on Ubuntu 16.10?
First of all update your system with the command:
sudo apt-get update
Above command will download the package lists for Ubuntu 16.10 on your system. This will update the list of newest versions of packages and its dependencies on your system.
After downloading the latest package list with the help of above you can run the installation process.
If pbhoney is not installed on your compter then the command 'dpkg -L pbhoney' will give followin error.
deepak@deepak-VirtualBox:~$ dpkg -L pbhoney dpkg-query: package 'pbhoney' is not installed Use dpkg --info (= dpkg-deb --info) to examine archive files, and dpkg --contents (= dpkg-deb --contents) to list their contents. deepak@deepak-VirtualBox:~$
Installing pbhoney:
After system update use the following command to install pbhoney:
sudo apt-get install pbhoney
Above command will confirm before installing the package on your Ubuntu 16.10 Operating System. If you are not already logged in as su, installer will ask you the root password. After completion of the installation you can use the package on your system.
How to uninstall/remove pbhoney from Ubuntu 16.10?
Now we will see the commands for uninstalling the pbhoney from Ubuntu 16.10. For uninstalling this package you can easily use the apt command and remove the package from Linux Operating System.
To remove the pbhoney following command is used:
sudo apt-get remove pbhoney
Following command is used to remove the pbhoney package along with its dependencies:
sudo apt-get remove --auto-remove pbhoney
This will remove pbhoney and all its dependent packages which is no longer needed in the system.
Completely removing pbhoney with all configuration files:
Following command should be used with care as it deletes all the configuration files and data:
sudo apt-get purge pbhoney
or you can use following command also:
sudo apt-get purge --auto-remove pbhoney
Above command will remove all the configuration files and data associated with pbhoney package. You can can't recover the delete data, so, use this command with care.